BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC000248

Symbol
LOC657004

Product
serine protease H3

NCBI Equivalent
657004

Fly Homologues
none identified

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	8.6 ± 0.7	4.3	37 ± 4.6	1.9
Brain	0.3 ± 0.1	n.a.	1.0 ± 0.4	0.1
Anterior Midgut	0.1 ± 0.1	n.a.	0.1 ± 0.1	0.0
Posterior Midgut	0.1 ± 0.1	n.a.	0.6 ± 0.3	0.0
Hindgut	19 ± 3.9	9.5	61 ± 17	3.2
Tubules (Free)	0.0 ± 0.0	n.a.	0.1 ± 0.1	0.0
Perirectal Tubules	4.3 ± 6.5	2.1
Rectum	17 ± 1.5	8.5
Rectal complex	12 ± 0.7	6.2	34 ± 5.9	1.7
Fat Body	1.0 ± 0.2	n.a.	4.4 ± 4.6	0.2
Male Gonads	0.2 ± 0.1	n.a.
Female Gonads	0.5 ± 0.3	n.a.
Carcass	13 ± 8.7	6.5	151 ± 90	7.8

Whole Body	1.8 ± 0.2		19 ± 14

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC000248-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC000248	1.1 ± 0.1	25 ± 3.9	74 ± 3.0	27 ± 3.8

TC000248-RA	1.1 ± 0.1	25 ± 3.9	74 ± 3.0	27 ± 3.8