BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC000458

Symbol
Snx6

Product
Sorting nexin-6-like Protein

NCBI Equivalent
657707

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	16 ± 0.8	0.8	19 ± 1.2	1.0
Brain	141 ± 2.2	7.4	79 ± 2.1	4.4
Anterior Midgut	134 ± 21	7.0	98 ± 9.7	5.4
Posterior Midgut	162 ± 41	8.4	92 ± 28	5.1
Hindgut	43 ± 18	2.2	45 ± 21	2.5
Tubules (Free)	21 ± 0.3	1.1	27 ± 1.3	1.5
Perirectal Tubules	22 ± 2.0	1.1
Rectum	19 ± 0.7	1.0
Rectal complex	20 ± 0.3	1.0	23 ± 0.9	1.3
Fat Body	75 ± 29	3.9	64 ± 14	3.5
Male Gonads	84 ± 3.8	4.4
Female Gonads	129 ± 33	6.7
Carcass	39 ± 2.5	2.1	27 ± 2.5	1.5

Whole Body	19 ± 0.7		18 ± 2.5

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC000458-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC000458	42 ± 3.8	26 ± 4.3	23 ± 2.3	27 ± 7.8

TC000458-RA	42 ± 3.8	26 ± 4.3	23 ± 2.3	27 ± 7.8