BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC000508

Symbol
Ppox

Product
Protoporphyrinogen oxidase-like Protein

NCBI Equivalent
664142

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	3.1 ± 0.8	0.9	2.6 ± 0.6	0.7
Brain	1.6 ± 0.2	0.5	1.7 ± 0.3	0.5
Anterior Midgut	5.9 ± 0.3	1.7	3.6 ± 0.9	1.0
Posterior Midgut	4.0 ± 0.1	1.2	3.8 ± 0.4	1.1
Hindgut	3.4 ± 1.1	1.0	3.4 ± 0.2	1.0
Tubules (Free)	17 ± 1.7	5.0	18 ± 0.3	5.0
Perirectal Tubules	4.2 ± 1.8	1.2
Rectum	3.5 ± 0.3	1.0
Rectal complex	3.7 ± 0.5	1.1	3.0 ± 0.1	0.8
Fat Body	2.7 ± 0.2	0.8	4.4 ± 0.5	1.3
Male Gonads	2.2 ± 0.4	0.6
Female Gonads	2.5 ± 0.4	0.7
Carcass	2.2 ± 0.3	0.7	2.7 ± 0.4	0.8

Whole Body	3.4 ± 0.3		3.5 ± 0.6

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC000508-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC000508	2.5 ± 0.5	1.6 ± 0.1	1.6 ± 0.2	1.6 ± 0.4

TC000508-RA	2.5 ± 0.5	1.6 ± 0.1	1.6 ± 0.2	1.6 ± 0.4