BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC000739

Symbol
Snx3

Product
Sorting nexin-12-like Protein

NCBI Equivalent
663140

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	33 ± 1.2	0.8	35 ± 3.4	1.1
Brain	149 ± 2.3	3.7	135 ± 5.6	4.3
Anterior Midgut	111 ± 2.8	2.8	127 ± 36	4.1
Posterior Midgut	113 ± 16	2.8	118 ± 21	3.8
Hindgut	76 ± 21	1.9	56 ± 23	1.8
Tubules (Free)	28 ± 2.9	0.7	29 ± 1.5	0.9
Perirectal Tubules	34 ± 2.9	0.8
Rectum	29 ± 0.4	0.7
Rectal complex	30 ± 0.5	0.8	34 ± 2.0	1.1
Fat Body	94 ± 30	2.4	182 ± 22	5.9
Male Gonads	162 ± 18	4.1
Female Gonads	164 ± 28	4.1
Carcass	83 ± 16	2.1	59 ± 12	1.9

Whole Body	40 ± 4.2		31 ± 2.6

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC000739-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC000739	110 ± 4.8	74 ± 8.7	77 ± 11	75 ± 24

TC000739-RA	110 ± 4.8	74 ± 8.7	77 ± 11	75 ± 24