BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC001072

Symbol
shtd

Product
shattered

NCBI Equivalent
664178

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	2.9 ± 0.4	0.8	2.0 ± 0.7	1.0
Brain	0.6 ± 0.0	0.2	0.6 ± 0.0	0.3
Anterior Midgut	0.5 ± 0.0	0.1	0.6 ± 0.3	0.3
Posterior Midgut	0.5 ± 0.1	0.1	0.7 ± 0.1	0.3
Hindgut	0.3 ± 0.1	0.1	0.8 ± 0.4	0.4
Tubules (Free)	2.0 ± 0.2	0.5	2.4 ± 0.3	1.2
Perirectal Tubules	1.4 ± 0.2	0.4
Rectum	2.1 ± 0.1	0.6
Rectal complex	1.4 ± 0.3	0.4	1.9 ± 0.1	0.9
Fat Body	1.0 ± 0.1	0.3	0.3 ± 0.3	0.2
Male Gonads	0.9 ± 0.3	0.3
Female Gonads	0.8 ± 0.2	0.2
Carcass	0.7 ± 0.2	0.2	0.6 ± 0.3	0.3

Whole Body	3.7 ± 0.3		2.0 ± 0.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC001072-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC001072	1.4 ± 0.2	0.8 ± 0.2	0.6 ± 0.2	0.4 ± 0.2

TC001072-RA	1.4 ± 0.2	0.8 ± 0.2	0.6 ± 0.2	0.4 ± 0.2