BeetleAtlas2 – Gene
For a particular Tribolium gene, find the pattern of expression in different tissues.
• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY
TC ID
TC001089
Symbol
 Ddx56
Product
 ATP-dependent RNA helicase p62-like Protein
NCBI Equivalent
655034
Fly Homologues
 Fly homologues
Beetle Paralogues
 Beetle Paralogues
SDs   Whole Body  
Adult & Larval Gene FPKMs and Enrichments
AdultLarval
TissueFPKMEnrichmentFPKMEnrichment
Head4.8 ± 0.20.810 ± 1.81.7
Brain3.1 ± 0.20.55.5 ± 0.90.9
Anterior Midgut12 ± 0.92.06.6 ± 0.81.1
Posterior Midgut10 ± 0.31.88.3 ± 1.11.4
Hindgut5.7 ± 1.31.06.0 ± 0.71.0
Tubules (Free)9.4 ± 1.21.67.5 ± 0.31.2
Perirectal Tubules7.2 ± 0.51.3  
Rectum7.4 ± 0.61.3  
Rectal complex6.5 ± 0.71.16.9 ± 0.41.1
Fat Body7.2 ± 1.71.36.6 ± 1.71.1
Male Gonads7.1 ± 0.31.2  
Female Gonads11 ± 1.22.0  
Carcass5.8 ± 1.81.06.0 ± 0.31.0
Whole Body5.7 ± 0.26.1 ± 0.6
download
Rotate to see Transcript Table
View in UCSC Genome Browser to check results / gene predictionslinkout
Adult & Larval Transcript FPKMs
TranscriptAdultLarval
HdBrAgPgHgTuPtRmRcFbGmGfCsHdBrAgPgHgTuRcFbCs
TC001089-RA
download
Embryo FPKMs
StageEmbryo0–1 h1–24 h24–36 h36–72 h
TC00108914 ± 0.618 ± 1.312 ± 0.97.1 ± 0.3
TC001089-RA14 ± 0.618 ± 1.312 ± 0.97.1 ± 0.3
0–1 h1–24 h24–36 h36–72 h05101520FPKM