BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC001449

Symbol
Sema5c

Product
semaphorin-5c

NCBI Equivalent
655313

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	6.7 ± 1.7	1.5	5.5 ± 0.7	0.7
Brain	0.8 ± 0.2	0.2	0.5 ± 0.3	0.1
Anterior Midgut	2.8 ± 1.9	0.6	5.8 ± 4.8	0.7
Posterior Midgut	5.9 ± 1.8	1.3	4.1 ± 3.8	0.5
Hindgut	0.7 ± 0.2	0.1	0.9 ± 0.5	0.1
Tubules (Free)	17 ± 1.0	3.9	17 ± 3.1	2.1
Perirectal Tubules	4.4 ± 0.6	1.0
Rectum	3.3 ± 0.5	0.7
Rectal complex	3.2 ± 0.9	0.7	3.5 ± 0.3	0.4
Fat Body	1.8 ± 1.3	0.4	0.5 ± 0.2	0.1
Male Gonads	0.1 ± 0.1	0.0
Female Gonads	0.2 ± 0.1	0.0
Carcass	0.7 ± 0.8	0.2	0.5 ± 0.2	0.1

Whole Body	4.5 ± 0.4		8.1 ± 2.1

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC001449-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC001449	0.0 ± 0.0	1.1 ± 0.1	1.5 ± 0.4	1.8 ± 0.4

TC001449-RA	0.0 ± 0.0	1.1 ± 0.1	1.5 ± 0.4	1.8 ± 0.4