BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC001511

Symbol
LOC659888

Product
Rab-like protein 6

NCBI Equivalent
659888

Fly Homologues
none identified

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	8.0 ± 0.3	0.5	8.1 ± 1.1	1.0
Brain	18 ± 0.8	1.2	14 ± 0.1	1.8
Anterior Midgut	8.7 ± 0.3	0.6	9.0 ± 0.5	1.1
Posterior Midgut	8.6 ± 0.3	0.6	12 ± 0.7	1.5
Hindgut	6.1 ± 0.3	0.4	7.4 ± 0.2	0.9
Tubules (Free)	5.0 ± 0.3	0.3	5.3 ± 0.3	0.7
Perirectal Tubules	6.0 ± 0.3	0.4
Rectum	7.0 ± 0.6	0.4
Rectal complex	5.2 ± 0.5	0.3	6.2 ± 0.6	0.8
Fat Body	14 ± 2.1	0.9	18 ± 3.8	2.2
Male Gonads	21 ± 2.1	1.3
Female Gonads	9.2 ± 0.6	0.6
Carcass	6.0 ± 0.9	0.4	6.9 ± 0.8	0.9

Whole Body	16 ± 2.1		8.0 ± 2.9

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC001511-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC001511	10 ± 0.2	8.0 ± 0.9	6.2 ± 0.6	8.2 ± 2.0

TC001511-RA	10 ± 0.2	8.0 ± 0.9	6.2 ± 0.6	8.2 ± 2.0