BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC001602

Symbol
LOC660909

Product
bunched

NCBI Equivalent
660909

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	4.7 ± 0.4	1.8	4.1 ± 0.9	1.1
Brain	43 ± 2.1	17	30 ± 1.6	8.2
Anterior Midgut	2.4 ± 0.5	0.9	4.2 ± 0.6	1.1
Posterior Midgut	2.8 ± 0.3	1.1	5.5 ± 0.4	1.5
Hindgut	8.5 ± 2.3	3.3	11 ± 2.7	3.1
Tubules (Free)	6.8 ± 0.7	2.6	6.5 ± 1.1	1.8
Perirectal Tubules	4.8 ± 0.1	1.9
Rectum	5.0 ± 0.8	1.9
Rectal complex	3.2 ± 0.1	1.2	4.0 ± 0.5	1.1
Fat Body	5.0 ± 1.0	1.9	5.8 ± 1.2	1.6
Male Gonads	7.1 ± 1.4	2.7
Female Gonads	2.8 ± 0.3	1.1
Carcass	4.1 ± 0.3	1.6	5.7 ± 2.0	1.6

Whole Body	2.6 ± 0.2		3.7 ± 0.2

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC001602-RA
TC001602-RB
TC001602-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC001602	0.7 ± 0.2	1.3 ± 0.2	2.7 ± 0.4	2.0 ± 0.4

TC001602-RA	0.0 ± 0.0	0.0 ± 0.0	0.0 ± 0.0	0.0 ± 0.0
TC001602-RB	0.7 ± 0.2	1.3 ± 0.2	2.7 ± 0.3	1.8 ± 0.4
TC001602-RC	0.0 ± 0.0	0.0 ± 0.0	0.0 ± 0.0	0.2 ± 0.1