BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC002003

Symbol
cact

Product
cactus

NCBI Equivalent
657221

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	82 ± 3.3	3.7	70 ± 5.6	1.2
Brain	26 ± 0.5	1.2	34 ± 1.4	0.6
Anterior Midgut	59 ± 4.1	2.7	147 ± 38	2.4
Posterior Midgut	57 ± 10	2.6	102 ± 39	1.7
Hindgut	30 ± 5.3	1.4	35 ± 6.8	0.6
Tubules (Free)	17 ± 3.0	0.8	28 ± 2.0	0.5
Perirectal Tubules	30 ± 7.2	1.4
Rectum	38 ± 1.9	1.7
Rectal complex	42 ± 3.5	1.9	34 ± 8.0	0.6
Fat Body	15 ± 2.4	0.7	209 ± 172	3.5
Male Gonads	12 ± 2.3	0.6
Female Gonads	38 ± 3.6	1.7
Carcass	339 ± 113	15	126 ± 18	2.1

Whole Body	22 ± 1.7		60 ± 16

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC002003-RA
TC002003-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC002003	15 ± 1.3	15 ± 1.8	15 ± 0.8	15 ± 4.0

TC002003-RA	2.2 ± 0.3	4.6 ± 2.0	3.0 ± 0.6	2.0 ± 0.1
TC002003-RC	13 ± 1.5	11 ± 1.1	12 ± 0.3	13 ± 3.9