BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC002100

Symbol
LOC657770

Product
E3 ubiquitin-protein ligase RNF13-like Protein

NCBI Equivalent
657770

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	23 ± 0.3	1.5	20 ± 4.7	0.9
Brain	21 ± 1.6	1.4	24 ± 2.5	1.0
Anterior Midgut	15 ± 1.4	1.0	20 ± 1.4	0.9
Posterior Midgut	17 ± 0.4	1.1	27 ± 1.8	1.2
Hindgut	39 ± 10	2.6	52 ± 8.4	2.3
Tubules (Free)	41 ± 2.0	2.7	45 ± 4.3	2.0
Perirectal Tubules	70 ± 11	4.7
Rectum	45 ± 1.2	3.0
Rectal complex	41 ± 1.1	2.7	34 ± 2.1	1.5
Fat Body	19 ± 3.9	1.2	92 ± 30	4.0
Male Gonads	20 ± 2.7	1.3
Female Gonads	7.4 ± 1.9	0.5
Carcass	37 ± 7.2	2.5	35 ± 2.7	1.5

Whole Body	15 ± 0.9		23 ± 1.3

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC002100-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC002100	3.6 ± 0.4	20 ± 1.5	7.1 ± 0.7	4.2 ± 0.3

TC002100-RA	3.6 ± 0.4	20 ± 1.5	7.1 ± 0.7	4.2 ± 0.3