BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC002123

Symbol
PDCD-5

Product
Programmed cell death protein 5-like Protein

NCBI Equivalent
656129

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	29 ± 2.0	1.3	63 ± 7.0	1.4
Brain	32 ± 0.2	1.4	35 ± 3.2	0.8
Anterior Midgut	31 ± 2.4	1.4	33 ± 1.3	0.8
Posterior Midgut	34 ± 6.6	1.5	34 ± 4.1	0.8
Hindgut	49 ± 3.9	2.2	51 ± 11	1.2
Tubules (Free)	42 ± 1.9	1.9	42 ± 1.2	1.0
Perirectal Tubules	37 ± 1.5	1.7
Rectum	31 ± 1.5	1.4
Rectal complex	48 ± 3.5	2.2	58 ± 6.0	1.3
Fat Body	29 ± 2.7	1.3	61 ± 17	1.4
Male Gonads	20 ± 1.4	0.9
Female Gonads	37 ± 5.6	1.7
Carcass	50 ± 0.8	2.2	68 ± 1.3	1.6

Whole Body	22 ± 1.5		43 ± 20

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC002123-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC002123	150 ± 25	156 ± 6.8	179 ± 13	127 ± 27

TC002123-RA	150 ± 25	156 ± 6.8	179 ± 13	127 ± 27