BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC003159

Symbol
cu

Product
Protein angel-like Protein

NCBI Equivalent
663596

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	19 ± 1.9	0.9	24 ± 6.9	0.5
Brain	21 ± 0.9	0.9	3.6 ± 0.8	0.1
Anterior Midgut	33 ± 7.4	1.5	29 ± 6.4	0.6
Posterior Midgut	32 ± 6.4	1.5	31 ± 5.4	0.6
Hindgut	28 ± 7.7	1.3	72 ± 5.0	1.5
Tubules (Free)	107 ± 7.1	4.8	89 ± 4.7	1.9
Perirectal Tubules	5.4 ± 1.9	0.2
Rectum	8.8 ± 1.1	0.4
Rectal complex	8.8 ± 0.5	0.4	17 ± 1.2	0.4
Fat Body	45 ± 27	2.1	384 ± 180	8.0
Male Gonads	6.8 ± 1.0	0.3
Female Gonads	20 ± 5.9	0.9
Carcass	63 ± 25	2.9	49 ± 19	1.0

Whole Body	22 ± 3.0		48 ± 12

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC003159-RA
TC003159-RB
TC003159-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC003159	22 ± 0.6	23 ± 2.0	9.0 ± 0.5	6.9 ± 1.3

TC003159-RA	5.1 ± 0.4	17 ± 1.1	8.5 ± 0.2	5.4 ± 1.3
TC003159-RB	0.0 ± 0.1	2.3 ± 0.6	0.4 ± 0.4	0.3 ± 0.1
TC003159-RC	16 ± 0.9	3.6 ± 1.1	0.1 ± 0.1	1.2 ± 0.1