BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC003323

Symbol
LOC656817

Product
Cytochrome b-c1 complex subunit 2, mitochondrial-like Protein

NCBI Equivalent
656817

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	121 ± 5.5	1.3	186 ± 27	1.2
Brain	107 ± 2.8	1.2	122 ± 5.5	0.8
Anterior Midgut	1004 ± 95	11	323 ± 16	2.2
Posterior Midgut	685 ± 90	7.6	231 ± 25	1.5
Hindgut	177 ± 50	2.0	217 ± 47	1.4
Tubules (Free)	126 ± 9.3	1.4	130 ± 31	0.9
Perirectal Tubules	189 ± 30	2.1
Rectum	91 ± 3.0	1.0
Rectal complex	136 ± 1.9	1.5	200 ± 42	1.3
Fat Body	169 ± 44	1.9	820 ± 284	5.5
Male Gonads	91 ± 7.4	1.0
Female Gonads	76 ± 4.5	0.8
Carcass	644 ± 130	7.2	1097 ± 325	7.3

Whole Body	90 ± 4.5		150 ± 65

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC003323-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC003323	36 ± 4.1	29 ± 2.8	40 ± 4.3	44 ± 5.6

TC003323-RA	36 ± 4.1	29 ± 2.8	40 ± 4.3	44 ± 5.6