BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC003697

Symbol
Sk2

Product
Sphingosine kinase 2-like Protein

NCBI Equivalent
658654

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	4.5 ± 0.6	0.8	0.8 ± 0.5	0.4
Brain	1.4 ± 0.1	0.3	0.9 ± 0.2	0.4
Anterior Midgut	1.0 ± 0.4	0.2	1.3 ± 0.4	0.6
Posterior Midgut	0.8 ± 0.2	0.1	1.2 ± 0.1	0.6
Hindgut	1.3 ± 0.3	0.2	3.0 ± 0.9	1.4
Tubules (Free)	2.0 ± 0.2	0.4	2.7 ± 0.3	1.2
Perirectal Tubules	5.4 ± 2.4	1.0
Rectum	4.6 ± 0.1	0.9
Rectal complex	2.4 ± 0.7	0.4	2.0 ± 0.1	0.9
Fat Body	3.1 ± 0.6	0.6	4.5 ± 4.1	2.0
Male Gonads	6.6 ± 1.8	1.2
Female Gonads	1.6 ± 0.2	0.3
Carcass	1.4 ± 0.3	0.3	1.1 ± 0.6	0.5

Whole Body	5.3 ± 0.6		2.2 ± 1.7

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC003697-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC003697	1.1 ± 0.2	0.3 ± 0.0	0.1 ± 0.0	0.1 ± 0.0

TC003697-RA	1.1 ± 0.2	0.3 ± 0.0	0.1 ± 0.0	0.1 ± 0.0