BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC003905

Symbol
Cda9

NCBI Equivalent
659575

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	18 ± 11	0.1	3.8 ± 4.4	0.0
Brain	0.1 ± 0.0	0.0	0.1 ± 0.0	0.0
Anterior Midgut	13160 ± 2370	99	33178 ± 4902	98
Posterior Midgut	6258 ± 1246	47	7303 ± 1848	22
Hindgut	1.1 ± 0.4	0.0	0.5 ± 0.1	0.0
Tubules (Free)	0.1 ± 0.0	0.0	0.1 ± 0.1	0.0
Perirectal Tubules	0.3 ± 0.2	0.0
Rectum	0.5 ± 0.0	0.0
Rectal complex	1.3 ± 0.5	0.0	3.7 ± 5.3	0.0
Fat Body	171 ± 94	1.3	0.9 ± 0.8	0.0
Male Gonads	1.9 ± 2.6	0.0
Female Gonads	1.5 ± 0.3	0.0
Carcass	3.0 ± 3.3	0.0	11 ± 7.9	0.0

Whole Body	133 ± 17		339 ± 85

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC003905-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC003905	0.1 ± 0.0	0.1 ± 0.0	0.0 ± 0.0	0.1 ± 0.0

TC003905-RA	0.1 ± 0.0	0.1 ± 0.0	0.0 ± 0.0	0.1 ± 0.0