BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC003944

Symbol
LOC655409

Product
Actin, indirect flight muscle-like Protein

NCBI Equivalent
655409

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	5.1 ± 0.8	0.1	45 ± 22	1.5
Brain	0.8 ± 0.0	0.0	2.0 ± 0.7	0.1
Anterior Midgut	6.8 ± 1.7	0.2	14 ± 9.9	0.5
Posterior Midgut	7.6 ± 2.4	0.2	5.8 ± 3.5	0.2
Hindgut	3.9 ± 0.8	0.1	22 ± 11	0.7
Tubules (Free)	10 ± 3.1	0.3	17 ± 2.9	0.6
Perirectal Tubules	12 ± 5.2	0.3
Rectum	18 ± 1.6	0.4
Rectal complex	15 ± 2.4	0.4	32 ± 4.0	1.1
Fat Body	80 ± 85	1.9	0.5 ± 0.2	0.0
Male Gonads	2.5 ± 0.5	0.1
Female Gonads	2.1 ± 0.5	0.1
Carcass	405 ± 445	9.8	75 ± 69	2.5

Whole Body	41 ± 6.0		30 ± 11

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC003944-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC003944	0.4 ± 0.1	0.5 ± 0.1	9.8 ± 2.6	104 ± 32

TC003944-RA	0.4 ± 0.1	0.5 ± 0.1	9.8 ± 2.6	104 ± 32