BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

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Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC004625

Symbol
LOC656239

Product
Very long-chain-fatty-acid--CoA ligase bubblegum-like Protein

NCBI Equivalent
656239

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	15 ± 0.9	0.7	5.3 ± 1.2	0.2
Brain	1.7 ± 0.2	0.1	1.4 ± 0.1	0.1
Anterior Midgut	10 ± 1.8	0.5	14 ± 2.3	0.6
Posterior Midgut	7.4 ± 1.4	0.3	13 ± 2.3	0.6
Hindgut	3.4 ± 2.3	0.2	0.8 ± 0.1	0.0
Tubules (Free)	15 ± 0.6	0.7	15 ± 1.1	0.7
Perirectal Tubules	4.3 ± 0.4	0.2
Rectum	1.6 ± 0.1	0.1
Rectal complex	1.5 ± 0.2	0.1	3.6 ± 0.7	0.2
Fat Body	20 ± 14	0.9	166 ± 147	7.1
Male Gonads	46 ± 12	2.1
Female Gonads	11 ± 1.2	0.5
Carcass	33 ± 10	1.5	28 ± 26	1.2

Whole Body	22 ± 3.8		23 ± 7.0

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC004625-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC004625	1.6 ± 0.1	2.6 ± 0.1	2.2 ± 0.2	2.3 ± 0.3

TC004625-RA	1.6 ± 0.1	2.6 ± 0.1	2.2 ± 0.2	2.3 ± 0.3