BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC004877

Symbol
LOC657859

Product
Alcohol dehydrogenase [NADP(+)] A-like Protein

NCBI Equivalent
657859

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	17 ± 1.4	1.0	4.8 ± 1.2	0.2
Brain	13 ± 1.4	0.8	31 ± 12	1.4
Anterior Midgut	46 ± 7.0	2.7	10 ± 2.9	0.5
Posterior Midgut	30 ± 1.7	1.7	6.9 ± 0.6	0.3
Hindgut	61 ± 16	3.5	40 ± 2.7	1.9
Tubules (Free)	5.7 ± 0.9	0.3	8.3 ± 2.5	0.4
Perirectal Tubules	59 ± 17	3.4
Rectum	47 ± 0.6	2.7
Rectal complex	57 ± 1.0	3.3	63 ± 9.5	2.9
Fat Body	7.9 ± 2.0	0.5	110 ± 113	5.1
Male Gonads	2.4 ± 0.6	0.1
Female Gonads	3.6 ± 1.6	0.2
Carcass	16 ± 5.5	0.9	18 ± 13	0.8

Whole Body	17 ± 4.4		22 ± 13

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC004877-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC004877	4.7 ± 0.6	2.0 ± 0.2	0.7 ± 0.1	1.6 ± 0.1

TC004877-RA	4.7 ± 0.6	2.0 ± 0.2	0.7 ± 0.1	1.6 ± 0.1