BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC005398

Symbol
LOC658914

Product
Histone H3.3-like Protein

NCBI Equivalent
658914

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	107 ± 2.1	0.9	237 ± 57	1.4
Brain	1731 ± 102	14	2613 ± 539	15
Anterior Midgut	2189 ± 172	18	1771 ± 103	10
Posterior Midgut	2424 ± 156	20	1406 ± 150	8.2
Hindgut	828 ± 548	6.8	503 ± 275	2.9
Tubules (Free)	160 ± 17	1.3	128 ± 8.8	0.8
Perirectal Tubules	289 ± 40	2.4
Rectum	187 ± 1.9	1.5
Rectal complex	155 ± 2.0	1.3	160 ± 12	0.9
Fat Body	1162 ± 133	9.5	928 ± 31	5.4
Male Gonads	1531 ± 120	12
Female Gonads	1109 ± 150	9.0
Carcass	941 ± 67	7.7	1010 ± 309	5.9

Whole Body	123 ± 6.4		171 ± 34

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC005398-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC005398	804 ± 151	3756 ± 1425	7481 ± 3317	5444 ± 1433

TC005398-RA	804 ± 151	3756 ± 1425	7481 ± 3317	5444 ± 1433