BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC005406

Symbol
kraken

Product
Probable serine hydrolase-like Protein

NCBI Equivalent
658960

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	15 ± 0.8	0.6	32 ± 12	1.2
Brain	5.2 ± 0.6	0.2	4.6 ± 0.8	0.2
Anterior Midgut	52 ± 6.0	2.1	32 ± 12	1.2
Posterior Midgut	59 ± 19	2.4	46 ± 8.7	1.7
Hindgut	11 ± 3.3	0.5	14 ± 2.1	0.5
Tubules (Free)	169 ± 6.4	7.0	92 ± 11	3.5
Perirectal Tubules	18 ± 1.3	0.7
Rectum	16 ± 0.9	0.7
Rectal complex	16 ± 1.8	0.7	18 ± 1.2	0.7
Fat Body	16 ± 3.6	0.7	52 ± 12	2.0
Male Gonads	21 ± 2.2	0.9
Female Gonads	10 ± 0.4	0.4
Carcass	38 ± 2.2	1.6	15 ± 7.0	0.6

Whole Body	24 ± 3.0		26 ± 21

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC005406-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC005406	23 ± 2.1	9.2 ± 0.6	4.3 ± 0.2	6.0 ± 0.7

TC005406-RA	23 ± 2.1	9.2 ± 0.6	4.3 ± 0.2	6.0 ± 0.7