BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC006260

Symbol
Rpn5

Product
COP9 signalosome complex subunit 4-like Protein

NCBI Equivalent
655144

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	30 ± 0.9	1.1	63 ± 8.5	1.6
Brain	41 ± 3.4	1.4	55 ± 8.7	1.4
Anterior Midgut	154 ± 10	5.5	96 ± 13	2.5
Posterior Midgut	153 ± 7.3	5.4	70 ± 5.2	1.8
Hindgut	95 ± 30	3.4	77 ± 43	2.0
Tubules (Free)	42 ± 3.2	1.5	37 ± 2.2	0.9
Perirectal Tubules	30 ± 3.2	1.1
Rectum	35 ± 1.9	1.2
Rectal complex	38 ± 2.2	1.3	48 ± 3.9	1.2
Fat Body	90 ± 7.6	3.2	81 ± 16	2.1
Male Gonads	117 ± 6.9	4.1
Female Gonads	94 ± 19	3.4
Carcass	162 ± 90	5.7	115 ± 52	3.0

Whole Body	28 ± 2.3		39 ± 5.5

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC006260-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC006260	42 ± 3.9	52 ± 8.4	66 ± 9.1	58 ± 9.2

TC006260-RA	42 ± 3.9	52 ± 8.4	66 ± 9.1	58 ± 9.2