BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC006409

Symbol
sds22

Product
Protein lap4-like Protein

NCBI Equivalent
663856

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	23 ± 1.1	1.2	25 ± 1.8	1.0
Brain	35 ± 0.3	1.9	38 ± 1.9	1.5
Anterior Midgut	78 ± 5.4	4.2	46 ± 3.4	1.8
Posterior Midgut	86 ± 9.5	4.6	55 ± 7.0	2.2
Hindgut	42 ± 1.7	2.2	45 ± 9.7	1.8
Tubules (Free)	43 ± 6.1	2.3	46 ± 2.7	1.9
Perirectal Tubules	40 ± 1.9	2.1
Rectum	44 ± 1.2	2.4
Rectal complex	37 ± 1.5	2.0	34 ± 0.9	1.4
Fat Body	20 ± 2.5	1.1	46 ± 15	1.8
Male Gonads	27 ± 6.2	1.4
Female Gonads	29 ± 1.8	1.6
Carcass	33 ± 6.1	1.8	29 ± 3.1	1.2

Whole Body	19 ± 1.1		25 ± 2.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC006409-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC006409	70 ± 11	72 ± 8.1	80 ± 19	50 ± 4.5

TC006409-RA	70 ± 11	72 ± 8.1	80 ± 19	50 ± 4.5