BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC007672

Symbol
Ptp10D

Product
Tyrosine-protein phosphatase 10D-like Protein

NCBI Equivalent
663785

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	6.2 ± 1.9	1.9	25 ± 3.6	2.8
Brain	0.8 ± 0.0	0.2	1.3 ± 0.1	0.1
Anterior Midgut	0.5 ± 0.0	0.1	0.8 ± 0.2	0.1
Posterior Midgut	0.5 ± 0.1	0.1	0.8 ± 0.2	0.1
Hindgut	2.9 ± 0.7	0.9	8.0 ± 2.9	0.9
Tubules (Free)	0.7 ± 0.1	0.2	0.7 ± 0.1	0.1
Perirectal Tubules	6.9 ± 2.8	2.1
Rectum	15 ± 0.6	4.7
Rectal complex	10 ± 1.7	3.1	17 ± 3.0	1.9
Fat Body	1.0 ± 0.1	0.3	1.2 ± 0.7	0.1
Male Gonads	1.1 ± 0.2	0.3
Female Gonads	1.1 ± 0.5	0.3
Carcass	3.1 ± 1.3	0.9	5.7 ± 2.7	0.6

Whole Body	3.3 ± 0.6		9.0 ± 1.6

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC007672-RA
TC007672-RB

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC007672	1.1 ± 0.1	1.7 ± 0.4	2.0 ± 0.5	2.3 ± 0.3

TC007672-RA	1.1 ± 0.1	1.7 ± 0.4	1.9 ± 0.5	2.2 ± 0.3
TC007672-RB	0.0 ± 0.0	0.1 ± 0.0	0.1 ± 0.0	0.1 ± 0.1