BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC007894

Symbol
Actn

Product
Alpha-actinin, sarcomeric-like Protein

NCBI Equivalent
661042

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	174 ± 28	3.4	425 ± 81	2.9
Brain	45 ± 2.7	0.9	82 ± 4.9	0.6
Anterior Midgut	50 ± 7.6	1.0	54 ± 2.1	0.4
Posterior Midgut	44 ± 5.5	0.9	39 ± 2.0	0.3
Hindgut	314 ± 216	6.1	230 ± 135	1.6
Tubules (Free)	58 ± 6.9	1.1	46 ± 12	0.3
Perirectal Tubules	60 ± 28	1.2
Rectum	110 ± 12	2.1
Rectal complex	132 ± 7.1	2.6	88 ± 8.6	0.6
Fat Body	55 ± 2.0	1.1	26 ± 25	0.2
Male Gonads	79 ± 21	1.5
Female Gonads	37 ± 4.8	0.7
Carcass	724 ± 258	14	2072 ± 1091	14

Whole Body	51 ± 3.6		146 ± 112

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC007894-RA
TC007894-RB
TC007894-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC007894	3.1 ± 0.1	5.8 ± 0.4	7.1 ± 0.7	12 ± 1.6

TC007894-RA	0.2 ± 0.4	0.2 ± 0.2	0.4 ± 0.6	5.7 ± 1.1
TC007894-RB	2.9 ± 0.5	5.5 ± 0.5	6.7 ± 0.5	5.9 ± 1.8
TC007894-RC	0.0 ± 0.0	0.0 ± 0.1	0.0 ± 0.1	0.1 ± 0.1