BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC008971

Symbol
LOC658949

Product
Lipoma HMGIC fusion partner-like 2 protein

NCBI Equivalent
658949

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	3.4 ± 1.0	0.6	9.9 ± 0.7	1.2
Brain	10 ± 0.2	1.7	16 ± 4.3	2.0
Anterior Midgut	1.3 ± 0.4	0.2	5.2 ± 1.3	0.7
Posterior Midgut	1.8 ± 0.1	0.3	5.6 ± 1.2	0.7
Hindgut	9.3 ± 2.0	1.5	15 ± 3.2	1.9
Tubules (Free)	0.7 ± 0.1	0.1	2.5 ± 0.4	0.3
Perirectal Tubules	3.9 ± 0.8	0.6
Rectum	5.1 ± 1.1	0.8
Rectal complex	3.3 ± 0.2	0.5	10 ± 2.5	1.3
Fat Body	18 ± 4.5	3.0	12 ± 3.0	1.5
Male Gonads	24 ± 8.1	3.8
Female Gonads	23 ± 12	3.8
Carcass	4.8 ± 1.7	0.8	12 ± 0.9	1.5

Whole Body	6.2 ± 1.5		8.0 ± 1.7

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC008971-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC008971	23 ± 3.1	21 ± 0.5	72 ± 12	92 ± 24

TC008971-RA	23 ± 3.1	21 ± 0.5	72 ± 12	92 ± 24