BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC009038

Symbol
stmA

Product
Protein EFR3 homolog cmp44E-like Protein

NCBI Equivalent
658139

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	18 ± 1.0	2.7	10 ± 2.2	1.2
Brain	41 ± 0.6	6.2	27 ± 4.8	3.1
Anterior Midgut	5.4 ± 0.8	0.8	6.3 ± 0.7	0.7
Posterior Midgut	5.7 ± 0.4	0.9	7.7 ± 1.0	0.9
Hindgut	7.2 ± 1.0	1.1	10 ± 2.5	1.2
Tubules (Free)	4.6 ± 0.2	0.7	5.9 ± 0.7	0.7
Perirectal Tubules	15 ± 1.4	2.2
Rectum	10 ± 0.5	1.5
Rectal complex	12 ± 0.7	1.9	10 ± 1.2	1.2
Fat Body	6.0 ± 1.1	0.9	7.9 ± 3.2	0.9
Male Gonads	7.1 ± 0.8	1.1
Female Gonads	4.3 ± 0.8	0.6
Carcass	9.3 ± 3.2	1.4	9.4 ± 2.9	1.1

Whole Body	6.7 ± 0.1		8.5 ± 2.4

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC009038-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC009038	4.5 ± 0.3	5.6 ± 0.7	17 ± 2.1	14 ± 1.1

TC009038-RA	4.5 ± 0.3	5.6 ± 0.7	17 ± 2.1	14 ± 1.1