BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC009279

Symbol
shrb

Product
Charged multivesicular body protein 4b-like Protein

NCBI Equivalent
658514

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	25 ± 2.5	1.3	50 ± 6.0	1.3
Brain	57 ± 1.5	3.0	76 ± 1.1	1.9
Anterior Midgut	101 ± 5.2	5.3	145 ± 16	3.7
Posterior Midgut	127 ± 9.9	6.7	146 ± 17	3.7
Hindgut	80 ± 14	4.2	91 ± 23	2.3
Tubules (Free)	31 ± 2.3	1.6	29 ± 0.4	0.7
Perirectal Tubules	55 ± 6.8	2.9
Rectum	57 ± 1.1	3.0
Rectal complex	45 ± 4.2	2.4	40 ± 2.5	1.0
Fat Body	48 ± 9.2	2.5	95 ± 20	2.4
Male Gonads	50 ± 6.2	2.6
Female Gonads	44 ± 2.0	2.3
Carcass	123 ± 24	6.5	108 ± 17	2.7

Whole Body	19 ± 0.9		40 ± 14

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC009279-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC009279	72 ± 5.6	100 ± 4.6	125 ± 19	116 ± 18

TC009279-RA	72 ± 5.6	100 ± 4.6	125 ± 19	116 ± 18