BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC009441

Symbol
cert

Product
Collagen type IV alpha-3-binding protein-like Protein

NCBI Equivalent
659185

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	20 ± 1.4	0.7	20 ± 3.1	0.9
Brain	123 ± 15	4.4	48 ± 17	2.3
Anterior Midgut	64 ± 24	2.3	56 ± 25	2.7
Posterior Midgut	42 ± 14	1.5	37 ± 15	1.8
Hindgut	67 ± 36	2.4	75 ± 44	3.6
Tubules (Free)	25 ± 1.0	0.9	27 ± 1.9	1.3
Perirectal Tubules	84 ± 21	3.0
Rectum	48 ± 5.6	1.7
Rectal complex	49 ± 2.2	1.8	57 ± 4.6	2.8
Fat Body	89 ± 18	3.2	120 ± 79	5.8
Male Gonads	173 ± 8.2	6.1
Female Gonads	105 ± 14	3.7
Carcass	71 ± 22	2.5	32 ± 3.7	1.6

Whole Body	28 ± 3.2		21 ± 2.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC009441-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC009441	18 ± 1.0	11 ± 0.9	14 ± 0.5	16 ± 1.0

TC009441-RA	18 ± 1.0	11 ± 0.9	14 ± 0.5	16 ± 1.0