BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC010126

Symbol
Rtca

Product
RNA 3'-terminal phosphate cyclase-like Protein

NCBI Equivalent
659795

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	4.7 ± 0.2	0.7	4.2 ± 0.6	0.9
Brain	5.3 ± 0.4	0.8	4.9 ± 0.4	1.0
Anterior Midgut	4.4 ± 0.2	0.7	5.0 ± 1.3	1.0
Posterior Midgut	3.8 ± 0.3	0.6	4.5 ± 0.5	1.0
Hindgut	5.7 ± 1.0	0.9	4.6 ± 0.4	1.0
Tubules (Free)	4.6 ± 0.7	0.7	5.3 ± 0.4	1.1
Perirectal Tubules	5.2 ± 0.7	0.8
Rectum	4.9 ± 0.4	0.8
Rectal complex	6.4 ± 0.3	1.0	5.1 ± 0.2	1.1
Fat Body	9.0 ± 1.2	1.4	4.4 ± 1.5	0.9
Male Gonads	12 ± 3.6	1.8
Female Gonads	4.9 ± 0.4	0.8
Carcass	4.6 ± 0.3	0.7	4.5 ± 1.5	0.9

Whole Body	6.4 ± 0.5		4.8 ± 1.2

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC010126-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC010126	7.4 ± 0.3	4.5 ± 0.2	6.5 ± 0.2	6.7 ± 1.1

TC010126-RA	7.4 ± 0.3	4.5 ± 0.2	6.5 ± 0.2	6.7 ± 1.1