BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC010662

Symbol
m-cup

Product
Protein fem-1 homolog CG6966-like Protein

NCBI Equivalent
655478

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	4.0 ± 0.2	0.8	4.1 ± 0.4	1.4
Brain	4.9 ± 0.1	1.0	4.1 ± 0.2	1.4
Anterior Midgut	2.0 ± 0.1	0.4	2.3 ± 0.2	0.8
Posterior Midgut	2.2 ± 0.2	0.4	3.0 ± 0.3	1.0
Hindgut	2.1 ± 0.1	0.4	2.7 ± 0.8	0.9
Tubules (Free)	2.4 ± 0.2	0.5	2.4 ± 0.2	0.8
Perirectal Tubules	4.3 ± 0.3	0.9
Rectum	4.2 ± 0.5	0.8
Rectal complex	4.3 ± 0.2	0.9	4.0 ± 0.5	1.4
Fat Body	3.2 ± 0.3	0.6	1.8 ± 0.4	0.6
Male Gonads	7.5 ± 1.0	1.5
Female Gonads	5.3 ± 0.5	1.0
Carcass	2.3 ± 0.3	0.5	2.9 ± 0.9	1.0

Whole Body	5.0 ± 0.1		2.9 ± 0.1

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC010662-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC010662	1.8 ± 0.2	1.4 ± 0.1	1.1 ± 0.2	1.1 ± 0.1

TC010662-RA	1.8 ± 0.2	1.4 ± 0.1	1.1 ± 0.2	1.1 ± 0.1