BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC010779

Symbol
Hmgcl

Product
3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic-like Protein

NCBI Equivalent
661818

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	5.4 ± 0.4	1.1	4.9 ± 0.5	0.3
Brain	4.2 ± 0.4	0.8	6.5 ± 0.9	0.4
Anterior Midgut	13 ± 1.9	2.5	18 ± 1.1	1.0
Posterior Midgut	13 ± 1.2	2.5	13 ± 2.0	0.7
Hindgut	15 ± 4.8	2.9	21 ± 6.5	1.2
Tubules (Free)	19 ± 0.6	3.7	24 ± 0.7	1.4
Perirectal Tubules	4.8 ± 1.0	0.9
Rectum	3.8 ± 0.7	0.7
Rectal complex	6.6 ± 0.5	1.3	5.5 ± 1.1	0.3
Fat Body	27 ± 6.2	5.3	101 ± 22	5.8
Male Gonads	4.5 ± 0.3	0.9
Female Gonads	9.2 ± 0.5	1.8
Carcass	13 ± 3.0	2.5	17 ± 6.9	1.0

Whole Body	5.1 ± 0.8		17 ± 6.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC010779-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC010779	40 ± 3.2	21 ± 0.8	22 ± 1.9	26 ± 2.4

TC010779-RA	40 ± 3.2	21 ± 0.8	22 ± 1.9	26 ± 2.4