BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC012919

Symbol
LOC658756

Product
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like Protein

NCBI Equivalent
658756

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	0.8 ± 0.3	0.2	0.6 ± 0.4	0.0
Brain	0.4 ± 0.2	0.1	0.7 ± 0.2	0.0
Anterior Midgut	0.2 ± 0.1	0.0	1.1 ± 0.5	0.1
Posterior Midgut	0.1 ± 0.0	0.0	1.1 ± 0.4	0.1
Hindgut	229 ± 80	51	253 ± 1.9	15
Tubules (Free)	27 ± 2.3	6.0	20 ± 2.0	1.1
Perirectal Tubules	944 ± 261	211
Rectum	164 ± 7.0	37
Rectal complex	461 ± 27	103	390 ± 49	22
Fat Body	0.4 ± 0.3	0.1	0.0 ± 0.0	0.0
Male Gonads	4.3 ± 1.0	1.0
Female Gonads	0.6 ± 0.7	0.1
Carcass	0.4 ± 0.2	0.1	1.9 ± 1.3	0.1

Whole Body	4.5 ± 0.6		17 ± 17

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC012919-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC012919	0.0 ± 0.0	0.2 ± 0.0	0.0 ± 0.0	1.4 ± 0.2

TC012919-RA	0.0 ± 0.0	0.2 ± 0.0	0.0 ± 0.0	1.4 ± 0.2