BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC013390

Symbol
Plod

Product
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like Protein

NCBI Equivalent
662642

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	8.4 ± 0.7	2.0	38 ± 10	2.3
Brain	26 ± 1.3	6.4	34 ± 1.1	2.1
Anterior Midgut	4.2 ± 1.1	1.0	6.6 ± 0.8	0.4
Posterior Midgut	6.6 ± 0.8	1.6	8.2 ± 1.3	0.5
Hindgut	51 ± 16	12	41 ± 13	2.5
Tubules (Free)	11 ± 0.3	2.7	11 ± 2.5	0.7
Perirectal Tubules	15 ± 4.3	3.5
Rectum	28 ± 2.3	6.7
Rectal complex	25 ± 1.7	6.0	32 ± 6.6	1.9
Fat Body	30 ± 11	7.3	17 ± 4.7	1.0
Male Gonads	4.8 ± 1.6	1.2
Female Gonads	4.0 ± 0.7	1.0
Carcass	17 ± 9.5	4.0	26 ± 16	1.6

Whole Body	4.1 ± 0.6		17 ± 2.3

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC013390-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC013390	1.8 ± 0.1	3.6 ± 0.3	7.4 ± 0.5	18 ± 5.5

TC013390-RA	1.8 ± 0.1	3.6 ± 0.3	7.4 ± 0.5	18 ± 5.5