BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

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Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC014788

Symbol
RtGEF

Product
Rho guanine nucleotide exchange factor 7-like Protein

NCBI Equivalent
100141928

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	5.4 ± 0.8	1.3	9.5 ± 1.2	1.6
Brain	0.6 ± 0.2	0.1	0.5 ± 0.0	0.1
Anterior Midgut	1.0 ± 0.2	0.2	0.9 ± 0.3	0.1
Posterior Midgut	1.1 ± 0.2	0.2	0.8 ± 0.1	0.1
Hindgut	0.3 ± 0.1	0.1	0.3 ± 0.1	0.1
Tubules (Free)	6.0 ± 0.4	1.4	7.0 ± 0.1	1.2
Perirectal Tubules	6.3 ± 0.6	1.5
Rectum	5.2 ± 0.1	1.2
Rectal complex	7.2 ± 0.2	1.7	5.1 ± 0.3	0.9
Fat Body	0.6 ± 0.0	0.1	0.5 ± 0.2	0.1
Male Gonads	0.6 ± 0.2	0.1
Female Gonads	0.6 ± 0.1	0.1
Carcass	0.7 ± 0.3	0.2	0.9 ± 0.6	0.1

Whole Body	4.3 ± 0.2		6.0 ± 1.1

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC014788-RA
TC014788-RB
TC014788-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC014788	0.7 ± 0.1	0.7 ± 0.1	0.6 ± 0.0	0.7 ± 0.2

TC014788-RA	0.7 ± 0.1	0.6 ± 0.1	0.5 ± 0.1	0.5 ± 0.2
TC014788-RB	0.0 ± 0.0	0.0 ± 0.1	0.1 ± 0.1	0.1 ± 0.0
TC014788-RC	0.0 ± 0.0	0.0 ± 0.0	0.0 ± 0.0	0.0 ± 0.0