BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC014966

Symbol
Vps53

Product
Vacuolar protein sorting-associated protein 53 homolog-like Protein

NCBI Equivalent
662014

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	3.2 ± 0.1	0.4	5.9 ± 1.2	1.4
Brain	8.4 ± 0.4	1.0	9.1 ± 0.8	2.1
Anterior Midgut	11 ± 0.8	1.3	12 ± 1.3	2.7
Posterior Midgut	11 ± 1.5	1.3	11 ± 0.8	2.4
Hindgut	5.3 ± 0.6	0.6	8.1 ± 0.5	1.9
Tubules (Free)	4.5 ± 0.8	0.5	5.3 ± 0.3	1.2
Perirectal Tubules	5.9 ± 0.4	0.7
Rectum	5.8 ± 0.2	0.7
Rectal complex	4.9 ± 0.6	0.6	6.1 ± 0.8	1.4
Fat Body	15 ± 2.5	1.7	4.0 ± 1.6	0.9
Male Gonads	25 ± 8.9	2.9
Female Gonads	14 ± 1.4	1.7
Carcass	5.0 ± 1.3	0.6	5.1 ± 1.1	1.2

Whole Body	8.7 ± 1.0		4.3 ± 0.9

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC014966-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC014966	5.5 ± 0.2	2.9 ± 0.2	2.6 ± 0.1	3.4 ± 0.6

TC014966-RA	5.5 ± 0.2	2.9 ± 0.2	2.6 ± 0.1	3.4 ± 0.6