BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC015941

Symbol
homer

Product
Homer protein homolog 2-like Protein

NCBI Equivalent
657689

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	7.6 ± 0.4	1.5	5.5 ± 1.1	1.2
Brain	53 ± 5.5	11	29 ± 0.9	6.3
Anterior Midgut	5.0 ± 1.1	1.0	7.2 ± 1.8	1.6
Posterior Midgut	4.2 ± 0.7	0.9	7.7 ± 0.5	1.7
Hindgut	14 ± 6.6	2.8	13 ± 3.5	2.8
Tubules (Free)	5.2 ± 0.2	1.1	8.4 ± 0.9	1.8
Perirectal Tubules	9.6 ± 0.6	2.0
Rectum	10 ± 0.6	2.1
Rectal complex	5.7 ± 0.9	1.2	6.3 ± 0.3	1.4
Fat Body	5.7 ± 0.9	1.2	4.5 ± 0.4	1.0
Male Gonads	5.8 ± 0.9	1.2
Female Gonads	48 ± 3.6	9.8
Carcass	5.9 ± 0.3	1.2	6.0 ± 1.0	1.3

Whole Body	4.9 ± 0.8		4.6 ± 0.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC015941-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC015941	9.5 ± 0.6	4.9 ± 0.4	4.2 ± 0.1	3.8 ± 0.6

TC015941-RA	9.5 ± 0.6	4.9 ± 0.4	4.2 ± 0.1	3.8 ± 0.6