BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC030661

Symbol
LOC100141954

Product
Sorting nexin-13-like Protein

NCBI Equivalent
100141954

Fly Homologues
none identified

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	7.2 ± 0.7	1.1	2.0 ± 0.7	0.5
Brain	3.8 ± 0.4	0.6	2.7 ± 0.1	0.7
Anterior Midgut	1.0 ± 0.3	0.2	1.0 ± 0.2	0.3
Posterior Midgut	0.6 ± 0.2	0.1	1.4 ± 0.1	0.4
Hindgut	1.5 ± 0.1	0.2	2.1 ± 0.5	0.6
Tubules (Free)	4.7 ± 0.1	0.7	5.0 ± 0.1	1.4
Perirectal Tubules	4.1 ± 0.6	0.6
Rectum	5.6 ± 0.3	0.9
Rectal complex	2.8 ± 0.2	0.4	2.4 ± 0.2	0.6
Fat Body	2.9 ± 0.5	0.5	1.0 ± 0.3	0.3
Male Gonads	4.7 ± 0.9	0.7
Female Gonads	1.7 ± 0.1	0.3
Carcass	1.3 ± 0.3	0.2	1.4 ± 0.7	0.4

Whole Body	6.4 ± 0.6		3.7 ± 1.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC030661-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC030661	1.8 ± 0.1	0.9 ± 0.1	1.4 ± 0.2	1.0 ± 0.1

TC030661-RA	1.8 ± 0.1	0.9 ± 0.1	1.4 ± 0.2	1.0 ± 0.1