BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC030712

Symbol
Hrd3

Product
Protein sel-1 homolog 1-like Protein

NCBI Equivalent
107398173

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	22 ± 2.2	0.6	33 ± 4.0	1.1
Brain	51 ± 9.3	1.4	28 ± 2.7	0.9
Anterior Midgut	68 ± 14	1.9	71 ± 5.7	2.3
Posterior Midgut	83 ± 13	2.3	70 ± 17	2.3
Hindgut	33 ± 12	0.9	38 ± 16	1.2
Tubules (Free)	35 ± 0.8	1.0	48 ± 0.8	1.6
Perirectal Tubules	40 ± 2.1	1.1
Rectum	33 ± 3.3	0.9
Rectal complex	39 ± 0.6	1.1	39 ± 0.7	1.3
Fat Body	53 ± 16	1.5	53 ± 26	1.8
Male Gonads	92 ± 16	2.5
Female Gonads	14 ± 1.8	0.4
Carcass	31 ± 1.6	0.9	24 ± 0.7	0.8

Whole Body	36 ± 3.2		30 ± 4.1

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC030712-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC030712	2.2 ± 0.2	3.1 ± 0.2	3.6 ± 0.5	5.8 ± 3.4

TC030712-RA	2.2 ± 0.2	3.1 ± 0.2	3.6 ± 0.5	5.8 ± 3.4