BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC030912

Symbol
Vps50

Product
Coiled-coil domain-containing protein 132-like Protein

NCBI Equivalent
656861

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	9.4 ± 0.3	0.9	10 ± 1.3	1.6
Brain	8.4 ± 0.3	0.8	6.9 ± 0.3	1.1
Anterior Midgut	3.2 ± 0.6	0.3	4.7 ± 1.1	0.7
Posterior Midgut	3.0 ± 0.6	0.3	4.8 ± 0.6	0.7
Hindgut	3.5 ± 0.1	0.3	5.7 ± 0.9	0.9
Tubules (Free)	5.5 ± 1.0	0.5	5.5 ± 0.8	0.8
Perirectal Tubules	5.6 ± 0.2	0.5
Rectum	7.0 ± 0.8	0.7
Rectal complex	9.8 ± 1.1	0.9	11 ± 0.5	1.7
Fat Body	5.5 ± 2.1	0.5	2.6 ± 0.5	0.4
Male Gonads	8.9 ± 2.2	0.9
Female Gonads	4.2 ± 0.5	0.4
Carcass	3.8 ± 1.1	0.4	4.7 ± 1.1	0.7

Whole Body	10 ± 1.5		6.5 ± 1.3

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC030912-RA
TC030912-RB
TC030912-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC030912	2.7 ± 0.2	1.9 ± 0.2	1.8 ± 0.3	2.1 ± 1.0

TC030912-RA	0.5 ± 0.2	0.4 ± 0.0	0.4 ± 0.1	0.2 ± 0.2
TC030912-RB	2.0 ± 0.2	1.4 ± 0.1	1.4 ± 0.1	1.7 ± 1.0
TC030912-RC	0.2 ± 0.1	0.1 ± 0.1	0.0 ± 0.1	0.2 ± 0.1