BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC030914

Symbol
ATP7

Product
Copper-transporting ATPase 1-like Protein

NCBI Equivalent
656862

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	4.9 ± 0.7	0.2	12 ± 4.2	1.4
Brain	0.7 ± 0.3	0.0	0.8 ± 0.1	0.1
Anterior Midgut	2.6 ± 0.4	0.1	3.2 ± 0.4	0.4
Posterior Midgut	2.1 ± 0.2	0.1	3.0 ± 0.2	0.4
Hindgut	0.7 ± 0.2	0.0	1.8 ± 0.7	0.2
Tubules (Free)	17 ± 2.1	0.6	16 ± 1.4	1.9
Perirectal Tubules	3.9 ± 1.1	0.1
Rectum	8.3 ± 1.0	0.3
Rectal complex	6.8 ± 0.4	0.2	6.3 ± 0.3	0.7
Fat Body	4.7 ± 0.9	0.2	3.4 ± 1.2	0.4
Male Gonads	6.7 ± 0.5	0.2
Female Gonads	0.8 ± 0.1	0.0
Carcass	1.5 ± 0.1	0.1	1.1 ± 0.1	0.1

Whole Body	30 ± 4.7		8.5 ± 2.5

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC030914-RA
TC030914-RB

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC030914	1.5 ± 0.2	1.1 ± 0.2	0.6 ± 0.2	1.0 ± 0.5

TC030914-RA	1.4 ± 0.3	1.0 ± 0.1	0.6 ± 0.2	1.0 ± 0.5
TC030914-RB	0.1 ± 0.1	0.1 ± 0.1	0.0 ± 0.1	0.0 ± 0.0