BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID (switches modes)

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC033581

Symbol
Swim

Product
Tubulointerstitial nephritis antigen-like

NCBI Equivalent
656198

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	4.8 ± 0.2	1.5	47 ± 24	1.1
Brain	0.3 ± 0.2	0.1	11 ± 4.9	0.3
Anterior Midgut	1.0 ± 0.1	0.3	5.5 ± 2.0	0.1
Posterior Midgut	0.8 ± 0.1	0.2	5.0 ± 1.8	0.1
Hindgut	4.5 ± 1.9	1.4	33 ± 3.6	0.8
Tubules (Free)	47 ± 10	14	90 ± 3.0	2.1
Perirectal Tubules	4.7 ± 4.1	1.4
Rectum	19 ± 2.0	5.8
Rectal complex	15 ± 0.8	4.5	84 ± 31	1.9
Fat Body	3.6 ± 0.8	1.1	14 ± 2.4	0.3
Male Gonads	7.8 ± 3.5	2.4
Female Gonads	2.7 ± 0.8	0.8
Carcass	6.9 ± 3.6	2.1	110 ± 82	2.5

Whole Body	3.3 ± 0.4		43 ± 23

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC033581-RA
TC033581-RB

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC033581	0.5 ± 0.1	0.8 ± 0.1	2.4 ± 0.2	3.4 ± 0.2

TC033581-RA	0.1 ± 0.2	0.1 ± 0.2	0.1 ± 0.1	0.3 ± 0.3
TC033581-RB	0.4 ± 0.1	0.7 ± 0.2	2.2 ± 0.1	3.1 ± 0.1