BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC034726

Symbol
sno

Product
Protein strawberry notch-like protein

NCBI Equivalent
655369

Fly Homologues
Fly homologues

Beetle Paralogues
none identified

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	8.1 ± 1.5	1.2	6.6 ± 1.3	1.0
Brain	48 ± 7.0	6.8	21 ± 3.5	3.4
Anterior Midgut	20 ± 5.7	2.8	15 ± 2.6	2.3
Posterior Midgut	17 ± 2.6	2.4	11 ± 0.8	1.7
Hindgut	5.0 ± 2.9	0.7	5.3 ± 0.7	0.8
Tubules (Free)	6.0 ± 0.3	0.9	7.0 ± 0.3	1.1
Perirectal Tubules	5.9 ± 0.7	0.8
Rectum	5.2 ± 0.4	0.8
Rectal complex	4.9 ± 0.7	0.7	6.0 ± 0.6	1.0
Fat Body	8.1 ± 1.7	1.2	5.8 ± 1.8	0.9
Male Gonads	6.2 ± 3.1	0.9
Female Gonads	22 ± 1.4	3.1
Carcass	6.5 ± 2.5	0.9	4.5 ± 2.1	0.7

Whole Body	7.0 ± 1.1		6.3 ± 1.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC034726-RA
TC034726-RB
TC034726-RC

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC034726	8.0 ± 1.4	4.3 ± 0.6	3.0 ± 0.3	4.2 ± 1.8

TC034726-RA	1.9 ± 0.2	0.7 ± 0.3	0.3 ± 0.5	1.6 ± 0.5
TC034726-RB	1.1 ± 0.5	0.6 ± 0.1	0.5 ± 0.2	0.3 ± 0.4
TC034726-RC	5.0 ± 1.3	3.1 ± 0.9	2.2 ± 0.5	2.3 ± 1.6