BeetleAtlas: The Tribolium Gene Expression Atlas

For a particular Tribolium gene, find the pattern of expression in different tissues.

• Choose search type, start entering text, then select from the autosuggest menu •
Gene ID (e.g. TC006446)
Gene Symbol (e.g. Hcf)
Gene Product (enter partial term like ‘eye’, ‘inositol’)
NCBI ID — Switch to NCBI mode to work with NCBI IDs

or use a Drosophila ID to search for related Tribolium genes
FlyBase ID (e.g. FBgn0016075)
FlyBase CG number (e.g. CG16858)
FlyBase Symbol (e.g. vkg)

Gene:

ANATOMICAL KEY

TC ID
TC034804

Symbol
casp

Product
FAS-associated factor 1-like protein

NCBI Equivalent
664346

Fly Homologues
Fly homologues

Beetle Paralogues
Beetle Paralogues

SDs Whole Body

Adult & Larval Gene FPKMs and Enrichments

	Adult		Larval
Tissue	FPKM	Enrichment	FPKM	Enrichment
Head	9.9 ± 0.3	0.8	7.9 ± 1.1	1.0
Brain	11 ± 0.1	1.0	12 ± 1.0	1.4
Anterior Midgut	11 ± 1.9	1.0	9.7 ± 0.6	1.2
Posterior Midgut	9.8 ± 0.9	0.8	10 ± 1.4	1.3
Hindgut	7.8 ± 1.6	0.7	9.5 ± 0.9	1.2
Tubules (Free)	15 ± 1.1	1.3	14 ± 0.5	1.7
Perirectal Tubules	13 ± 1.5	1.1
Rectum	9.9 ± 1.1	0.8
Rectal complex	11 ± 0.8	0.9	11 ± 1.4	1.4
Fat Body	16 ± 4.2	1.4	7.7 ± 0.7	0.9
Male Gonads	24 ± 6.1	2.1
Female Gonads	13 ± 0.9	1.1
Carcass	18 ± 10	1.6	6.7 ± 1.2	0.8

Whole Body	12 ± 1.1		8.1 ± 2.8

Rotate to see Transcript Table

View in UCSC Genome Browser to check results / gene predictions

Adult & Larval Transcript FPKMs

Transcript	Adult													Larval
	Hd	Br	Ag	Pg	Hg	Tu	Pt	Rm	Rc	Fb	Gm	Gf	Cs	Hd	Br	Ag	Pg	Hg	Tu	Rc	Fb	Cs
TC034804-RA

Embryo FPKMs

StageEmbryo	0–1 h	1–24 h	24–36 h	36–72 h
TC034804	7.3 ± 0.8	4.9 ± 1.4	4.5 ± 1.6	4.0 ± 1.0

TC034804-RA	7.3 ± 0.8	4.9 ± 1.4	4.5 ± 1.6	4.0 ± 1.0