This is the ‘NCBI’ mode of BeetleAtlas 2 — the resource for tissue-specific transcriptomics in Tribolium castaneum. Use it for work on beetle genes with numeric NCBI IDs.
Queries of the following types are available from the menu above:
- GENE: For a particular gene, find details of its expression in different tissues or in embryos.
- TISSUE: For a given tissue, find the most highly expressed genes.
- CATEGORY: For a given tissue, find expressed genes in certain descriptive categories.
- ADULT/LARVA: For a given tissue, find genes with different expression in larva and adult.
- EMBRYO: Find genes expressed at different stages of embryonic development.
- PROFILE: Find genes with a pattern of expression similar to a gene of interest.
In addition you can:
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Compare the results with those for any equivalent OGS3 gene.
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Examine the raw RNA-seq reads on the icTriCast1.1 genome assembly in the UCSC Genome Browser alongside both NCBI and OSG3 gene models.
…and
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OGS3 mode is available from the menu for switching to OGS3 IDs (‘TC’ prefix).
You can find further information in the Docs, and a paper describing the original Beetle Atlas is also available.
